GNET2
Constructing gene regulatory networks from expression data through functional module inference
Bioconductor version: 3.23 · Package version: 1.27.0
Cluster genes to functional groups with E-M process. Iteratively perform TF assigning and Gene assigning, until the assignment of genes did not change, or max number of iterations is reached.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("GNET2")Details
| Maintainer | Chen Chen <ccm3x@mail.missouri.edu> |
| Author | Chen Chen, Jie Hou and Jianlin Cheng |
| License | Apache License 2.0 |
| URL | https://github.com/chrischen1/GNET2 |
| Bug Reports | https://github.com/chrischen1/GNET2/issues |
| Status | Deprecated |
| Downloads rank | 321 |
| Source branch | RELEASE_3_23 |
| biocViews | GeneExpression, Network, NetworkInference, Regression, Software |
Download
Follow the installation instructions to use this package in your R session.
| Source package | GNET2_1.27.0.tar.gz |
| Windows binary (x86_64) | GNET2_1.27.0.zip |
| macOS binary (arm64) | GNET2_1.27.0.tgz |
| macOS binary (x86_64) | GNET2_1.27.0.tgz |
Dependencies
Depends: R (>= 3.6)
Imports: ggplot2, xgboost, Rcpp, reshape2, grid, DiagrammeR, methods, stats, matrixStats, graphics, SummarizedExperiment, dplyr, igraph, grDevices, utils
LinkingTo: Rcpp