DEScan2
Differential Enrichment Scan 2
Bioconductor version: 3.23 · Package version: 1.32.0
Integrated peak and differential caller, specifically designed for broad epigenomic signals.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("DEScan2")Details
| Maintainer | Dario Righelli <dario.righelli@gmail.com> |
| Author | Dario Righelli [aut, cre], John Koberstein [aut], Bruce Gomes [aut], Nancy Zhang [aut], Claudia Angelini [aut], Lucia Peixoto [aut], Davide Risso [aut] |
| License | Artistic-2.0 |
| Downloads rank | 619 |
| Source branch | RELEASE_3_23 |
| biocViews | Coverage, Epigenetics, ImmunoOncology, PeakDetection, Sequencing, Software |
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | DEScan2_1.32.0.tar.gz |
| Windows binary (x86_64) | DEScan2_1.32.0.zip |
| macOS binary (arm64) | DEScan2_1.32.0.tgz |
| macOS binary (x86_64) | DEScan2_1.32.0.tgz |
Dependencies
Depends: R (>= 3.5), GenomicRanges
Imports: BiocParallel, BiocGenerics, ChIPpeakAnno, data.table, DelayedArray, Seqinfo, GenomeInfoDb, GenomicAlignments, glue, IRanges, plyr, Rcpp (>= 0.12.13), rtracklayer, S4Vectors (>= 0.23.19), SummarizedExperiment, tools, utils
LinkingTo: Rcpp, RcppArmadillo
Suggests: BiocStyle, knitr, rmarkdown, testthat, edgeR, limma, EDASeq, RUVSeq, RColorBrewer, statmod