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savingBiocObjects

Saving Bioconductor Objects for Sharing

Bioconductor version: 3.24 · Package version: 0.99.1

Documentation and guidance on strategies for saving and sharing Bioconductor objects, covering RDS serialization, HDF5-backed storage, the alabaster ecosystem for cross-language interoperability, exporting genomic ranges to standard formats, and preserving object metadata.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("savingBiocObjects")

Details

MaintainerMichael Love <michaelisaiahlove@gmail.com>
AuthorMichael Love [aut, cre] (ORCID: <https://orcid.org/0000-0001-8401-0545>)
LicenseMIT + file LICENSE
URLhttps://mikelove.github.io/savingBiocObjects, https://bioconductor.org/packages/savingBiocObjects/
Bug Reportshttps://github.com/mikelove/savingBiocObjects/issues
System RequirementsQuarto (https://quarto.org)
Source branchdevel
biocViewsBasicWorkflow, Workflow

Download

Follow the installation instructions to use this package in your R session.

Source packagesavingBiocObjects_0.99.1.tar.gz
Dependencies

Suggests: SummarizedExperiment, SingleCellExperiment, GenomicRanges, HDF5Array, anndataR, alabaster.base, alabaster.se, rtracklayer, plyranges, jsonlite, BiocManager, knitr, quarto