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systemPipeRdata

systemPipeRdata: Workflow templates and sample data

Bioconductor version: 3.24 · Package version: 2.17.0

systemPipeRdata complements the systemPipeR workflow management system (WMS) by offering a collection of pre-designed data analysis workflow templates. These templates are easily accessible and can be readily loaded onto a user's system with a single command. Once loaded, the WMS can immediately utilize these templates for efficient end-to-end analysis, serving a wide range of data analysis needs.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("systemPipeRdata")

Details

MaintainerThomas Girke <thomas.girke@ucr.edu>
AuthorThomas Girke
LicenseArtistic-2.0
URLhttps://github.com/tgirke/systemPipeRdata
Downloads rank350
Source branchdevel
biocViewsAlignment, ChIPSeq, Coverage, DataImport, ExperimentData, GeneExpression, GeneSetEnrichment, Genetics, ImmunoOncology, Infrastructure, MethylSeq, QualityControl, RNASeq, RiboSeq, SNP, Sequencing, WorkflowStep

Download

Follow the installation instructions to use this package in your R session.

Source packagesystemPipeRdata_2.17.0.tar.gz
Dependencies

Depends: R (>= 3.6.0)

Imports: methods, Biostrings, BiocGenerics, jsonlite, remotes

Suggests: GenomicFeatures, DT, txdbmaker, GenomicRanges, IRanges, Rsamtools, ShortRead, rtracklayer, RUnit, BiocStyle, knitr, rmarkdown, systemPipeR, kableExtra, magrittr, dplyr, gert

Reverse dependencies

Suggests Me (2): systemPipeR, systemPipeShiny