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msd16s

Healthy and moderate to severe diarrhea 16S expression data

Bioconductor version: 3.24 · Package version: 1.33.0

Gut 16S sequencing expression data from 992 healthy and moderate-to-severe diarrhetic samples used in 'Diarrhea in young children from low-income countries leads to large-scale alterations in intestinal microbiota composition'.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("msd16s")

Details

MaintainerJoseph N. Paulson <jpaulson@umiacs.umd.edu>
AuthorJoseph N. Paulson, Hector Corrada Bravo, Mihai Pop
LicenseArtistic-2.0
URLhttp://www.cbcb.umd.edu/research/projects/GEMS-pathogen-discovery
Downloads rank218
Source branchdevel
biocViewsExperimentData, MicrobiomeData, SequencingData

Download

Follow the installation instructions to use this package in your R session.

Source packagemsd16s_1.33.0.tar.gz
Dependencies

Depends: R (>= 2.10), Biobase, metagenomeSeq

Reverse dependencies

Suggests Me (1): scTreeViz