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macrophage

Human macrophage immune response

Bioconductor version: 3.24 · Package version: 1.29.0

This package provides the output of running Salmon on a set of 24 RNA-seq samples from Alasoo, et al. "Shared genetic effects on chromatin and gene expression indicate a role for enhancer priming in immune response", published in Nature Genetics, January 2018. For details on version numbers and how the samples were processed see the package vignette.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("macrophage")

Details

MaintainerMichael Love <michaelisaiahlove@gmail.com>
AuthorMichael Love
LicenseGPL (>= 2)
Downloads rank494
Source branchdevel
biocViewsExperimentData, RNASeqData, SequencingData

Download

Follow the installation instructions to use this package in your R session.

Source packagemacrophage_1.29.0.tar.gz
Dependencies

Depends: R (>= 3.5.0)

Suggests: knitr, markdown

Reverse dependencies

Suggests Me (9): DeeDeeExperiment, EMMA, fishpond, fluentGenomics, GeDi, GeneTonic, mosdef, quantiseqr, tximeta