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curatedTBData

Curation of existing tuberculosis transcriptomic studies

Bioconductor version: 3.24 · Package version: 2.9.0

The curatedTBData is an R package that provides standardized, curated tuberculosis(TB) transcriptomic studies. The initial release of the package contains 49 studies. The curatedTBData package allows users to access tuberculosis trancriptomic efficiently and to make efficient comparison for different TB gene signatures across multiple datasets.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("curatedTBData")

Details

MaintainerXutao Wang <xutaow@bu.edu>
AuthorXutao Wang [aut, cre], W. Evan Johnson [aut], Prasad Patil [aut]
LicenseMIT + file LICENSE
URLhttps://github.com/compbiomed/curatedTBData
Bug Reportshttps://github.com/compbiomed/curatedTBData/issues
Downloads rank149
Source branchdevel
biocViewsExperimentData, ExperimentHub, GEO, Homo_sapiens_Data

Download

Follow the installation instructions to use this package in your R session.

Source packagecuratedTBData_2.9.0.tar.gz
Dependencies

Depends: R (>= 4.3.0)

Imports: AnnotationHub, ExperimentHub, MultiAssayExperiment, rlang, stats

Suggests: BiocStyle, DT, dplyr, HGNChelper, knitr, methods, rmarkdown, SummarizedExperiment, sva, testthat

Reverse dependencies

Suggests Me (1): BatchQC