IHWpaper
Reproduce figures in IHW paper
Bioconductor version: 3.24 · Package version: 1.41.0
This package conveniently wraps all functions needed to reproduce the figures in the IHW paper (https://www.nature.com/articles/nmeth.3885) and the data analysis in https://rss.onlinelibrary.wiley.com/doi/10.1111/rssb.12411, cf. the arXiv preprint (http://arxiv.org/abs/1701.05179). Thus it is a companion package to the Bioconductor IHW package.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("IHWpaper") Details
| Maintainer | Nikos Ignatiadis <nikos.ignatiadis01@gmail.com> |
| Author | Nikos Ignatiadis [aut, cre] |
| License | Artistic-2.0 |
| Downloads rank | 194 |
| Source branch | devel |
| biocViews | ExperimentData, ExpressionData, RNASeqData, ReproducibleResearch |
Download
Follow the installation instructions to use this package in your R session.
| Source package | IHWpaper_1.41.0.tar.gz |
Dependencies
Depends: R (>= 3.3), IHW
Imports: Rcpp, stats, splines, methods, utils, DESeq2, SummarizedExperiment, fdrtool, genefilter, qvalue, Biobase, BiocGenerics, BiocParallel, dplyr, grid, ggplot2, cowplot
LinkingTo: Rcpp
Suggests: testthat, RColorBrewer, wesanderson, scales, gridExtra, BiocStyle, knitr, rmarkdown, airway, locfdr, tidyr, latex2exp