HMP16SData
16S rRNA Sequencing Data from the Human Microbiome Project
Bioconductor version: 3.24 · Package version: 1.33.1
HMP16SData is a Bioconductor ExperimentData package of the Human Microbiome Project (HMP) 16S rRNA sequencing data for variable regions 1–3 and 3–5. Raw data files are provided in the package as downloaded from the HMP Data Analysis and Coordination Center. Processed data is provided as SummarizedExperiment class objects via ExperimentHub.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("HMP16SData") Details
| Maintainer | Lucas schiffer <schiffer.lucas@gmail.com> |
| Author | Lucas schiffer [aut, cre] (ORCID: <https://orcid.org/0000-0003-3628-0326>), Rimsha Azhar [aut], Marcel Ramos [ctb], Ludwig Geistlinger [ctb], Levi Waldron [aut], NCI [fnd] (GrantNo.: R01CA230551) |
| License | Artistic-2.0 |
| URL | https://github.com/waldronlab/HMP16SData |
| Bug Reports | https://github.com/waldronlab/HMP16SData/issues |
| Downloads rank | 228 |
| Source branch | devel |
| biocViews | ExperimentData, ExperimentHub, Homo_sapiens_Data, MicrobiomeData, ReproducibleResearch, SequencingData |
Download
Follow the installation instructions to use this package in your R session.
| Source package | HMP16SData_1.33.1.tar.gz |
Dependencies
Depends: R (>= 4.1.0), SummarizedExperiment
Imports: AnnotationHub, ExperimentHub, S4Vectors, assertthat, dplyr, kableExtra, knitr, magrittr, methods, readr, stringr, tibble, utils
Suggests: Biobase, BiocCheck, BiocManager, BiocStyle, circlize, cowplot, dendextend, devtools, ggplot2, gridExtra, haven, phyloseq, rmarkdown, roxygen2, stats, testthat, tidyr