geneslator
Geneslator, a tool for accurate gene name conversion
Bioconductor version: 3.24 · Package version: 0.99.14
Geneslator is a comprehensive R package that performs gene identifier conversion and ortholog mapping. The tool integrates multiple cross-organism databases (NCBI, Ensembl, UniProt, GO, KEGG, Reactome, Wikipathways) and organism-specific resources within a single, coherent framework. Geneslator supports many organisms, including human, mouse, rat, yeast, worm, fly, zebrafish and arabidopsis.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("geneslator")Details
| Maintainer | Giovanni Micale <giovanni.micale@unict.it> |
| Author | Giovanni Micale [aut, cre] (ORCID: <https://orcid.org/0000-0002-4953-026X>), Giulia Cavallaro [aut] (ORCID: <https://orcid.org/0009-0000-1212-8368>), Grete Francesca Privitera [aut] (ORCID: <https://orcid.org/0000-0003-1807-4780>), Alfredo Pulvirenti [aut] (ORCID: <https://orcid.org/0000-0002-9764-0295>), Stefano Forte [aut] (ORCID: <https://orcid.org/0000-0001-5746-7451>), Salvatore Alaimo [aut] (ORCID: <https://orcid.org/0000-0003-4825-7617>) |
| License | Artistic-2.0 |
| URL | https://github.com/knowmics-lab/geneslator |
| Bug Reports | https://github.com/knowmics-lab/geneslator/issues |
| Downloads rank | 5 |
| Source branch | devel |
| biocViews | AnnotationData, Arabidopsis_thaliana, Caenorhabditis_elegans, Danio_rerio, Drosophila_melanogaster, Homo_sapiens, Mus_musculus, OrgDb, Organism, OrganismDb, PackageType, Rattus_norvegicus, Saccharomyces_cerevisiae, zebrafish |
Download
Follow the installation instructions to use this package in your R session.
| Source package | geneslator_0.99.14.tar.gz |
Dependencies
Depends: R (>= 4.6.0)
Imports: AnnotationDbi, methods, IRanges, utils, jsonlite, DBI, curl, zen4R, BiocFileCache, KEGGREST