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chromhmmData

Chromosome Size, Coordinates and Anchor Files

Bioconductor version: 3.24 · Package version: 0.99.2

Annotation files of the formatted genomic annotation for ChromHMM. Three types of text files are included the chromosome sizes, region coordinates and anchors specifying the transcription start and end sites. The package includes data for two versions of the genome of humans and mice.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("chromhmmData")

Details

MaintainerMahmoud Ahmed <mahmoud.s.fahmy@students.kasralainy.edu.eg>
AuthorMahmoud Ahmed [aut, cre] (<https://orcid.org/0000-0002-4377-6541>)
LicenseGPL-3
Bug Reportshttps://github.com/MahShaaban/chromhmmData/issues
Downloads rank65
Source branchdevel
biocViewsAnnotationData, Homo_sapiens, Mus_musculus

Download

Follow the installation instructions to use this package in your R session.

Source packagechromhmmData_0.99.2.tar.gz
Dependencies

Depends: R (>= 4.1)

Suggests: rmarkdown, knitr

Reverse dependencies

Imports Me (1): segmenter