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XtraSNPlocs.Hsapiens.dbSNP144.GRCh37

Extra SNP locations for Homo sapiens (dbSNP Build 144)

Bioconductor version: 3.24 · Package version: 0.99.12

Extra SNP locations and alleles for Homo sapiens extracted from NCBI dbSNP Build 144. The source data files used for this package were created by NCBI on May 29-30, 2015, and contain SNPs mapped to reference genome GRCh37.p13 (a patched version of GRCh37 that doesn't alter chromosomes 1-22, X, Y, MT). While the SNPlocs.Hsapiens.dbSNP144.GRCh37 package contains only molecular variations of class "snp", this package contains molecular variations of other classes (in-del, heterozygous, microsatellite, named-locus, no-variation, mixed, and multinucleotide-polymorphism).

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("XtraSNPlocs.Hsapiens.dbSNP144.GRCh37")

Details

MaintainerH. Pages <hpages@fhcrc.org>
AuthorHerve Pages
LicenseArtistic-2.0
Downloads rank96
Source branchdevel
biocViewsAnnotationData, Genetics, Homo_sapiens, XtraSNPlocs

Download

Follow the installation instructions to use this package in your R session.

Source packageXtraSNPlocs.Hsapiens.dbSNP144.GRCh37_0.99.12.tar.gz
Dependencies

Depends: R (>= 2.10), BSgenome

Imports: methods, utils, BiocGenerics, S4Vectors, IRanges, GenomeInfoDb, GenomicRanges, BSgenome

Suggests: Biostrings, BSgenome.Hsapiens.UCSC.hg19, SNPlocs.Hsapiens.dbSNP144.GRCh37

Reverse dependencies

Imports Me (1): appreci8R