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SNPlocs.Hsapiens.dbSNP150.GRCh38

SNP locations for Homo sapiens (dbSNP Build 150)

Bioconductor version: 3.24 · Package version: 0.99.21

SNP locations and alleles for Homo sapiens extracted from NCBI dbSNP Build 150. The source data files used for this package were created by NCBI between March 12-14, 2017, and contain SNPs mapped to reference genome GRCh38.p7 (a patched version of GRCh38 that doesn't alter chromosomes 1-22, X, Y, MT). Note that these SNPs can be "injected" in BSgenome.Hsapiens.NCBI.GRCh38 or in BSgenome.Hsapiens.UCSC.hg38.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("SNPlocs.Hsapiens.dbSNP150.GRCh38")

Details

MaintainerH. Pagès <hpages@fredhutch.org>
AuthorHervé Pagès
LicenseArtistic-2.0
Downloads rank135
Source branchdevel
biocViewsAnnotationData, Genetics, Homo_sapiens, SNPlocs

Download

Follow the installation instructions to use this package in your R session.

Source packageSNPlocs.Hsapiens.dbSNP150.GRCh38_0.99.21.tar.gz
Dependencies

Depends: BSgenome (>= 1.43.4)

Imports: methods, utils, BiocGenerics, S4Vectors, IRanges, GenomeInfoDb, GenomicRanges, BSgenome

Suggests: Biostrings, BSgenome.Hsapiens.UCSC.hg38