SNPlocs.Hsapiens.dbSNP149.GRCh38
SNP locations for Homo sapiens (dbSNP Build 149)
Bioconductor version: 3.24 · Package version: 0.99.21
SNP locations and alleles for Homo sapiens extracted from NCBI dbSNP Build 149. The source data files used for this package were created by NCBI between November 8-12, 2016, and contain SNPs mapped to reference genome GRCh38.p7 (a patched version of GRCh38 that doesn't alter chromosomes 1-22, X, Y, MT). Note that these SNPs can be "injected" in BSgenome.Hsapiens.NCBI.GRCh38 or in BSgenome.Hsapiens.UCSC.hg38.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("SNPlocs.Hsapiens.dbSNP149.GRCh38")Details
| Maintainer | H. Pagès <hpages@fredhutch.org> |
| Author | Hervé Pagès |
| License | Artistic-2.0 |
| Downloads rank | 98 |
| Source branch | devel |
| biocViews | AnnotationData, Genetics, Homo_sapiens, SNPlocs |
Download
Follow the installation instructions to use this package in your R session.
| Source package | SNPlocs.Hsapiens.dbSNP149.GRCh38_0.99.21.tar.gz |
Dependencies
Depends: BSgenome (>= 1.43.4)
Imports: methods, utils, BiocGenerics, S4Vectors, IRanges, GenomeInfoDb, GenomicRanges, BSgenome
Suggests: Biostrings, BSgenome.Hsapiens.UCSC.hg38