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JASPAR2022

Data package for JASPAR database (version 2022)

Bioconductor version: 3.24 · Package version: 0.99.8

JASPAR is an open-access database containing manually curated, non-redundant transcription factor (TF) binding profiles for TFs across six taxonomic groups. In this 9th release, we expanded the CORE collection with 341 new profiles (148 for plants, 101 for vertebrates, 85 for urochordates, and 7 for insects), which corresponds to a 19% expansion over the previous release. To search thisdatabases, please use the package TFBSTools (>= 1.31.2).

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("JASPAR2022")

Details

MaintainerDamir Baranasic <damir.baranasic@lms.mrc.ac.uk>
AuthorDamir Baranasic [aut, cre] (<https://orcid.org/0000-0001-5948-0932>)
LicenseGPL-2
URLhttp://jaspar.genereg.net/
Downloads rank553
Source branchdevel
biocViewsAnnotationData, AnnotationHub, FunctionalAnnotation

Download

Follow the installation instructions to use this package in your R session.

Source packageJASPAR2022_0.99.8.tar.gz
Dependencies

Depends: R (>= 4.1.0), methods, BiocFileCache, utils

Suggests: knitr, rmarkdown, BiocStyle, TFBSTools (>= 1.31.2)

Reverse dependencies

Suggests Me (1): GRaNIE