GenomicState
Build and access GenomicState objects for use with derfinder tools from sources like Gencode
Bioconductor version: 3.24 · Package version: 0.99.17
This package contains functions for building GenomicState objects from different annotation sources such as Gencode. It also provides access to these files at JHPCE.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("GenomicState")Details
| Maintainer | Leonardo Collado-Torres <lcolladotor@gmail.com> |
| Author | Leonardo Collado-Torres [aut, cre] (ORCID: <https://orcid.org/0000-0003-2140-308X>) |
| License | Artistic-2.0 |
| URL | https://github.com/LieberInstitute/GenomicState |
| Bug Reports | https://support.bioconductor.org/t/GenomicState |
| Downloads rank | 155 |
| Source branch | devel |
| biocViews | AnnotationData, AnnotationHub, Homo_sapiens, TxDb |
Download
Follow the installation instructions to use this package in your R session.
| Source package | GenomicState_0.99.17.tar.gz |
Dependencies
Depends: AnnotationHub
Imports: Seqinfo, GenomicFeatures, rtracklayer, bumphunter, derfinder (>= 1.21.7), AnnotationDbi, IRanges, org.Hs.eg.db, utils, methods, txdbmaker
Suggests: knitr, rmarkdown, BiocStyle, sessioninfo, testthat (>= 2.1.0), glue, derfinderPlot, AnnotationHubData, GenomeInfoDbData, RefManageR, GenomicRanges, covr
Reverse dependencies
Imports Me (1): recountWorkflow