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ENCODExplorerData

A compilation of ENCODE metadata

Bioconductor version: 3.24 · Package version: 0.99.5

This package allows user to quickly access ENCODE project files metadata and give access to helper functions to query the ENCODE rest api, download ENCODE datasets and save the database in SQLite format.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ENCODExplorerData")

Details

MaintainerEric Fournier <Fournier.Eric.2@crchudequebec.ulaval.ca>
AuthorCharles Joly Beauparlant [aut], Eric Fournier [aut, cre], Arnaud Droit [aut]
LicenseArtistic-2.0
Bug Reportshttps://github.com/ArnaudDroitLab/ENCODExplorerData/issues
Downloads rank90
Source branchdevel
biocViewsAnnotationData, AnnotationHub, CustomDBSchema, Homo_sapiens, Mus_musculus

Download

Follow the installation instructions to use this package in your R session.

Source packageENCODExplorerData_0.99.5.tar.gz
Dependencies

Depends: R (>= 3.6)

Imports: tools, jsonlite, RCurl, data.table, methods

Suggests: AnnotationHub, RUnit, BiocGenerics, knitr, curl, httr