BSgenome.Mmusculus.UCSC.mm10.masked
Full masked genome sequences for Mus musculus (UCSC genome mm10, based on GRCm38.p6)
Bioconductor version: 3.24 · Package version: 1.4.3
Full genome sequences for Mus musculus (Mouse) as provided by UCSC (genome mm10, based on GRCm38.p6) and stored in Biostrings objects. The sequences are the same as in BSgenome.Mmusculus.UCSC.mm10, except that each of them has the 2 following masks on top: (1) the mask of assembly gaps (AGAPS mask), and (2) the mask of intra-contig ambiguities (AMB mask).
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("BSgenome.Mmusculus.UCSC.mm10.masked")Details
| Maintainer | Bioconductor Package Maintainer <maintainer@bioconductor.org> |
| Author | The Bioconductor Dev Team |
| License | Artistic-2.0 |
| Downloads rank | 97 |
| Source branch | devel |
| biocViews | AnnotationData, BSgenome, Genetics, Mus_musculus |
Download
Follow the installation instructions to use this package in your R session.
| Source package | BSgenome.Mmusculus.UCSC.mm10.masked_1.4.3.tar.gz |
Dependencies
Depends: R (>= 3.5.0), BSgenome (>= 1.60.0), BSgenome.Mmusculus.UCSC.mm10
Imports: BSgenome, BSgenome.Mmusculus.UCSC.mm10