BSgenome.Hsapiens.UCSC.hg38.dbSNP151.minor
Full genome sequences for Homo sapiens (UCSC version hg38, based on GRCh38.p12) with injected minor alleles (dbSNP151)
Bioconductor version: 3.24 · Package version: 0.0.9999
Full genome sequences for Homo sapiens (Human) as provided by UCSC (hg38, based on GRCh38.p12) with minor alleles injected from dbSNP151, and stored in Biostrings objects. Full genome sequences for Homo sapiens (Human) as provided by UCSC (hg38, based on GRCh38.p12) with minor alleles injected from dbSNP151, and stored in Biostrings objects. Only common single nucleotide variants (SNVs) with at least one alternate allele with frequency greater than 0.01 were considered. For SNVs with more than 1 alternate allele, the most frequent allele was chosen as the minor allele to be injected into the reference genome.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("BSgenome.Hsapiens.UCSC.hg38.dbSNP151.minor") Details
| Maintainer | Jean-Philippe Fortin <fortin946@gmail.com> |
| Author | Jean-Philippe Fortin |
| License | CC BY-NC-ND 4.0 |
| Downloads rank | 69 |
| Source branch | devel |
| biocViews | AnnotationData, BSgenome, Genetics, Homo_sapiens |
Download
Follow the installation instructions to use this package in your R session.
| Source package | BSgenome.Hsapiens.UCSC.hg38.dbSNP151.minor_0.0.9999.tar.gz |
Dependencies
Depends: R (>= 3.5.0), BSgenome (>= 1.56.0)
Suggests: BSgenome.Hsapiens.UCSC.hg38, BSgenome.Hsapiens.UCSC.hg38.dbSNP151.major, testthat
Reverse dependencies
Suggests Me (1): BSgenome.Hsapiens.UCSC.hg38.dbSNP151.major