transcriptogramer
Transcriptional analysis based on transcriptograms
Bioconductor version: 3.24 · Package version: 1.35.0
R package for transcriptional analysis based on transcriptograms, a method to analyze transcriptomes that projects expression values on a set of ordered proteins, arranged such that the probability that gene products participate in the same metabolic pathway exponentially decreases with the increase of the distance between two proteins of the ordering. Transcriptograms are, hence, genome wide gene expression profiles that provide a global view for the cellular metabolism, while indicating gene sets whose expressions are altered.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("transcriptogramer")Details
| Maintainer | Diego Morais <vinx@ufrn.edu.br> |
| Author | Diego Morais [aut, cre], Rodrigo Dalmolin [aut] |
| License | GPL (>= 2) |
| URL | https://github.com/arthurvinx/transcriptogramer |
| Bug Reports | https://github.com/arthurvinx/transcriptogramer/issues |
| System Requirements | Java Runtime Environment (>= 6) |
| Downloads rank | 578 |
| Source branch | devel |
| biocViews | Clustering, DifferentialExpression, GeneExpression, GeneSetEnrichment, GraphAndNetwork, ImmunoOncology, Microarray, Network, RNASeq, Software, SystemsBiology, Transcription, Visualization |
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | transcriptogramer_1.35.0.tar.gz |
| Windows binary (x86_64) | transcriptogramer_1.35.0.zip |
| macOS binary (arm64) | transcriptogramer_1.35.0.tgz |
| macOS binary (x86_64) | transcriptogramer_1.35.0.tgz |