tRNAscanImport
Importing a tRNAscan-SE result file as GRanges object
Bioconductor version: 3.24 · Package version: 1.33.0
The package imports the result of tRNAscan-SE as a GRanges object.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("tRNAscanImport")Details
| Maintainer | Felix G.M. Ernst <felix.gm.ernst@outlook.com> |
| Author | Felix G.M. Ernst [aut, cre] (ORCID: <https://orcid.org/0000-0001-5064-0928>) |
| License | GPL-3 + file LICENSE |
| URL | https://github.com/FelixErnst/tRNAscanImport |
| Bug Reports | https://github.com/FelixErnst/tRNAscanImport/issues |
| Downloads rank | 511 |
| Source branch | devel |
| biocViews | DataImport, Preprocessing, Software, Visualization, WorkflowStep |
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | tRNAscanImport_1.33.0.tar.gz |
| Windows binary (x86_64) | tRNAscanImport_1.33.0.zip |
| macOS binary (arm64) | tRNAscanImport_1.33.0.tgz |
| macOS binary (x86_64) | tRNAscanImport_1.33.0.tgz |
Dependencies
Depends: R (>= 3.5), GenomicRanges, tRNA
Imports: methods, stringr, BiocGenerics, Biostrings, Structstrings, S4Vectors, IRanges, XVector, Seqinfo, rtracklayer, BSgenome, Rsamtools
Suggests: BiocStyle, knitr, rmarkdown, testthat, ggplot2, BSgenome.Scerevisiae.UCSC.sacCer3
Reverse dependencies
Suggests Me (2): Structstrings, tRNA