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stageR

stageR: stage-wise analysis of high throughput gene expression data in R

Bioconductor version: 3.24 · Package version: 1.33.0

The stageR package allows automated stage-wise analysis of high-throughput gene expression data. The method is published in Genome Biology at https://genomebiology.biomedcentral.com/articles/10.1186/s13059-017-1277-0

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("stageR")

Details

MaintainerKoen Van den Berge <koen.vdberge@gmail.com>
AuthorKoen Van den Berge and Lieven Clement
LicenseGNU General Public License version 3
Downloads rank707
Source branchdevel
biocViewsSoftware, StatisticalMethod

Download

Follow the installation instructions to use this package in your R session.

Source packagestageR_1.33.0.tar.gz
Dependencies

Depends: R (>= 3.4), SummarizedExperiment

Imports: methods, stats

Suggests: knitr, rmarkdown, BiocStyle, methods, Biobase, edgeR, limma, DEXSeq, testthat

Reverse dependencies

Depends On Me (1): rnaseqDTU

Suggests Me (2): muscat, satuRn