similaRpeak
Metrics to estimate a level of similarity between two ChIP-Seq profiles
Bioconductor version: 3.24 · Package version: 1.45.0
This package calculates metrics which quantify the level of similarity between ChIP-Seq profiles. More specifically, the package implements six pseudometrics specialized in pattern similarity detection in ChIP-Seq profiles.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("similaRpeak") Details
| Maintainer | Astrid DeschĂȘnes <adeschen@hotmail.com> |
| Author | Astrid DeschĂȘnes [cre, aut], Elsa Bernatchez [aut], Charles Joly Beauparlant [aut], Fabien Claude Lamaze [aut], Rawane Samb [aut], Pascal Belleau [aut], Arnaud Droit [aut] |
| License | Artistic-2.0 |
| URL | https://github.com/adeschen/similaRpeak |
| Bug Reports | https://github.com/adeschen/similaRpeak/issues |
| Downloads rank | 538 |
| Source branch | devel |
| biocViews | BiologicalQuestion, ChIPSeq, DifferentialExpression, Genetics, MultipleComparison, Software |
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | similaRpeak_1.45.0.tar.gz |
| Windows binary (x86_64) | similaRpeak_1.45.0.zip |
| macOS binary (arm64) | similaRpeak_1.45.0.tgz |
| macOS binary (x86_64) | similaRpeak_1.45.0.tgz |
Dependencies
Depends: R6 (>= 2.0)
Imports: stats
Suggests: RUnit, BiocGenerics, knitr, Rsamtools, GenomicAlignments, rtracklayer, rmarkdown, BiocStyle