selectKSigs
Selecting the number of mutational signatures using a perplexity-based measure and cross-validation
Bioconductor version: 3.24 · Package version: 1.25.0
A package to suggest the number of mutational signatures in a collection of somatic mutations using calculating the cross-validated perplexity score.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("selectKSigs")Details
| Maintainer | Zhi Yang <zyang895@gmail.com> |
| Author | Zhi Yang [aut, cre], Yuichi Shiraishi [ctb] |
| License | GPL-3 |
| URL | https://github.com/USCbiostats/selectKSigs |
| Bug Reports | https://github.com/USCbiostats/HiLDA/selectKSigs |
| Downloads rank | 339 |
| Source branch | devel |
| biocViews | Clustering, Sequencing, Software, SomaticMutation, StatisticalMethod |
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | selectKSigs_1.25.0.tar.gz |
| Windows binary (x86_64) | selectKSigs_1.25.0.zip |
| macOS binary (arm64) | selectKSigs_1.25.0.tgz |
| macOS binary (x86_64) | selectKSigs_1.25.0.tgz |