riboSeqR
Analysis of sequencing data from ribosome profiling experiments
Bioconductor version: 3.24 · Package version: 1.47.0
Plotting functions, frameshift detection and parsing of sequencing data from ribosome profiling experiments.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("riboSeqR")Details
| Maintainer | Samuel Granjeaud <samuel.granjeaud@inserm.fr> |
| Author | Thomas J. Hardcastle [aut], Samuel Granjeaud [cre] (ORCID: <https://orcid.org/0000-0001-9245-1535>) |
| License | GPL-3 |
| URL | https://github.com/samgg/riboSeqR |
| Bug Reports | https://github.com/samgg/riboSeqR/issues |
| Downloads rank | 643 |
| Source branch | devel |
| biocViews | Genetics, RiboSeq, Sequencing, Software, Visualization |
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | riboSeqR_1.47.0.tar.gz |
| Windows binary (x86_64) | riboSeqR_1.47.0.zip |
| macOS binary (arm64) | riboSeqR_1.47.0.tgz |
| macOS binary (x86_64) | riboSeqR_1.47.0.tgz |
Dependencies
Depends: R (>= 3.0.2), methods, GenomicRanges, abind
Imports: Rsamtools, IRanges, S4Vectors, baySeq, Seqinfo, seqLogo
Suggests: BiocStyle, RUnit, BiocGenerics