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rhdf5filters

HDF5 Compression Filters

Bioconductor version: 3.24 · Package version: 1.25.4

Provides a collection of additional compression filters for HDF5 datasets. The package is intended to provide seamless integration with rhdf5, however the compiled filters can also be used with external applications.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("rhdf5filters")

Details

MaintainerHugo Gruson <hugo.gruson@embl.de>
AuthorMike Smith [aut, ccp] (ORCID: <https://orcid.org/0000-0002-7800-3848>), Hugo Gruson [cre] (ORCID: <https://orcid.org/0000-0002-4094-1476>)
LicenseBSD_2_clause + file LICENSE
URLhttps://github.com/Huber-group-EMBL/rhdf5filters
Bug Reportshttps://github.com/Huber-group-EMBL/rhdf5filters/issues
System RequirementsGNU make
Downloads rank25162
Source branchdevel
biocViewsDataImport, Infrastructure, Software

Documentation

Download

Follow the installation instructions to use this package in your R session.

Source packagerhdf5filters_1.25.4.tar.gz
Windows binary (x86_64)rhdf5filters_1.25.4.zip
macOS binary (arm64)rhdf5filters_1.25.4.tgz
macOS binary (x86_64)rhdf5filters_1.25.4.tgz
Dependencies

LinkingTo: Rhdf5lib

Suggests: BiocStyle, knitr, rmarkdown, testthat, rhdf5 (>= 2.47.7)

Reverse dependencies

Imports Me (2): h5mread, rhdf5