psichomics

Graphical Interface for Alternative Splicing Quantification, Analysis and Visualisation

Bioconductor version: 3.24 · Package version: 1.39.1

Interactive R package with an intuitive Shiny-based graphical interface for alternative splicing quantification and integrative analyses of alternative splicing and gene expression based on The Cancer Genome Atlas (TCGA), the Genotype-Tissue Expression project (GTEx), Sequence Read Archive (SRA) and user-provided data. The tool interactively performs survival, dimensionality reduction and median- and variance-based differential splicing and gene expression analyses that benefit from the incorporation of clinical and molecular sample-associated features (such as tumour stage or survival). Interactive visual access to genomic mapping and functional annotation of selected alternative splicing events is also included.

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("psichomics")