panelcn.mops
CNV detection tool for targeted NGS panel data
Bioconductor version: 3.24 · Package version: 1.35.0
CNV detection tool for targeted NGS panel data. Extension of the cn.mops package.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("panelcn.mops")Details
| Maintainer | Gundula Povysil <povysil@bioinf.jku.at> |
| Author | Verena Haunschmid [aut], Gundula Povysil [aut, cre] |
| License | LGPL (>= 2.0) |
| Downloads rank | 542 |
| Source branch | devel |
| biocViews | CellBiology, CopyNumberVariation, Genetics, GenomicVariation, Sequencing, Software, VariantDetection |
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | panelcn.mops_1.35.0.tar.gz |
| Windows binary (x86_64) | panelcn.mops_1.35.0.zip |
| macOS binary (arm64) | panelcn.mops_1.35.0.tgz |
| macOS binary (x86_64) | panelcn.mops_1.35.0.tgz |
Dependencies
Depends: R (>= 3.5), cn.mops, methods, utils, stats, graphics
Imports: GenomicRanges, Rsamtools, IRanges, S4Vectors, Seqinfo, grDevices
Suggests: knitr, rmarkdown, RUnit, BiocGenerics
Reverse dependencies
Suggests Me (1): CopyNumberPlots