pRolocGUI
Interactive visualisation of spatial proteomics data
Bioconductor version: 3.24 · Package version: 2.23.0
The package pRolocGUI comprises functions to interactively visualise spatial proteomics data on the basis of pRoloc, pRolocdata and shiny.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("pRolocGUI")Details
| Maintainer | Lisa Breckels <lms79@cam.ac.uk> |
| Author | Lisa Breckels [aut, cre] (ORCID: <https://orcid.org/0000-0001-8918-7171>), Thomas Naake [aut], Laurent Gatto [aut] (ORCID: <https://orcid.org/0000-0002-1520-2268>) |
| License | GPL-2 |
| URL | https://github.com/lgatto/pRolocGUI |
| Bug Reports | https://github.com/lgatto/pRolocGUI/issues |
| Downloads rank | 606 |
| Source branch | devel |
| biocViews | GUI, Proteomics, Software, Visualization |
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | pRolocGUI_2.23.0.tar.gz |
| Windows binary (x86_64) | pRolocGUI_2.23.0.zip |
| macOS binary (arm64) | pRolocGUI_2.23.0.tgz |
| macOS binary (x86_64) | pRolocGUI_2.23.0.tgz |
Dependencies
Depends: methods, R (>= 3.1.0), pRoloc (>= 1.27.6), Biobase, MSnbase (>= 2.1.11)
Imports: shiny (>= 0.9.1), scales, dplyr, DT (>= 0.1.40), graphics, utils, ggplot2, shinydashboardPlus (>= 2.0.0), colourpicker, shinyhelper, shinyWidgets, shinyjs, colorspace, stats, grDevices, grid, BiocGenerics, shinydashboard
Suggests: pRolocdata, knitr, BiocStyle (>= 2.5.19), rmarkdown, testthat (>= 3.0.0)