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miRNApath

miRNApath: Pathway Enrichment for miRNA Expression Data

Bioconductor version: 3.24 · Package version: 1.73.0

This package provides pathway enrichment techniques for miRNA expression data. Specifically, the set of methods handles the many-to-many relationship between miRNAs and the multiple genes they are predicted to target (and thus affect.) It also handles the gene-to-pathway relationships separately. Both steps are designed to preserve the additive effects of miRNAs on genes, many miRNAs affecting one gene, one miRNA affecting multiple genes, or many miRNAs affecting many genes.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("miRNApath")

Details

MaintainerJames M. Ward <jmw86069@gmail.com>
AuthorJames M. Ward <jmw86069@gmail.com> with contributions from Yunling Shi, Cindy Richards, John P. Cogswell
LicenseLGPL-2.1
Downloads rank427
Source branchdevel
biocViewsAnnotation, DifferentialExpression, NetworkEnrichment, Pathways, Software, miRNA

Documentation

Download

Follow the installation instructions to use this package in your R session.

Source packagemiRNApath_1.73.0.tar.gz
Windows binary (x86_64)miRNApath_1.73.0.zip
macOS binary (arm64)miRNApath_1.73.0.tgz
macOS binary (x86_64)miRNApath_1.73.0.tgz
Dependencies

Depends: methods, R (>= 2.7.0)