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mgsa

Model-based gene set analysis

Bioconductor version: 3.24 · Package version: 1.61.0

Model-based Gene Set Analysis (MGSA) is a Bayesian modeling approach for gene set enrichment. The package mgsa implements MGSA and tools to use MGSA together with the Gene Ontology.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("mgsa")

Details

MaintainerSebastian Bauer <mail@sebastianbauer.info>
AuthorSebastian Bauer <mail@sebastianbauer.info>, Julien Gagneur <gagneur@genzentrum.lmu.de>
LicenseArtistic-2.0
URLhttps://github.com/sba1/mgsa-bioc
Downloads rank517
Source branchdevel
biocViewsGO, GeneSetEnrichment, Pathways, Software

Documentation

Download

Follow the installation instructions to use this package in your R session.

Source packagemgsa_1.61.0.tar.gz
Windows binary (x86_64)mgsa_1.61.0.zip
macOS binary (arm64)mgsa_1.61.0.tgz
macOS binary (x86_64)mgsa_1.61.0.tgz
Dependencies

Depends: R (>= 2.14.0), methods, gplots

Imports: graphics, stats, utils

Suggests: DBI, RSQLite, GO.db, testthat