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iSEEid

iSEE extension to assist in identifying sets of samples/cells

Bioconductor version: 3.24 · Package version: 0.99.1

This package provides a dedicated panel to assist the sample identification within a single iSEE web-application. The main functionality of this package can be adopted to efficiently select samples (e.g. cells) that need to be identified and annotated in the analysis workflow. With iSEEid, the iSEE framework fully qualifies to be an ideal companion for assigning appropriate labels to large omics datasets.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("iSEEid")

Details

MaintainerFederico Marini <marinif@uni-mainz.de>
AuthorFederico Marini [aut, cre] (ORCID: <https://orcid.org/0000-0003-3252-7758>), Kevin Rue-Albrecht [aut] (ORCID: <https://orcid.org/0000-0003-3899-3872>), Charlotte Soneson [aut] (ORCID: <https://orcid.org/0000-0003-3833-2169>)
LicenseMIT + file LICENSE
URLhttps://github.com/iSEE/iSEEid
Bug Reportshttps://github.com/iSEE/iSEEid/issues
Downloads rank54
Source branchdevel
biocViewsCellBasedAssays, Clustering, DimensionReduction, FeatureExtraction, GUI, GeneExpression, ImmunoOncology, ShinyApps, SingleCell, Software, Transcription, Transcriptomics, Visualization

Documentation

Download

Follow the installation instructions to use this package in your R session.

Source packageiSEEid_0.99.1.tar.gz
Windows binary (x86_64)iSEEid_0.99.1.zip
macOS binary (arm64)iSEEid_0.99.1.tgz
macOS binary (x86_64)iSEEid_0.99.1.tgz
Dependencies

Depends: iSEE, SummarizedExperiment

Imports: methods, shiny, shinyAce

Suggests: scRNAseq, scater, knitr, rmarkdown, BiocStyle, testthat (>= 3.0.0), scrapper