gwascat
representing and modeling data in the EMBL-EBI GWAS catalog
Bioconductor version: 3.24 · Package version: 2.45.0
Represent and model data in the EMBL-EBI GWAS catalog.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("gwascat")Details
| Maintainer | VJ Carey <stvjc@channing.harvard.edu> |
| Author | VJ Carey <stvjc@channing.harvard.edu> |
| License | Artistic-2.0 |
| Downloads rank | 1154 |
| Source branch | devel |
| biocViews | Genetics, Software |
Documentation
- GWAS catalog: Phenotypes systematized by the experimental factor ontology
- gwascat: structuring and querying the NHGRI GWAS catalog
Download
Follow the installation instructions to use this package in your R session.
| Source package | gwascat_2.45.0.tar.gz |
| Windows binary (x86_64) | gwascat_2.45.0.zip |
| macOS binary (arm64) | gwascat_2.45.0.tgz |
| macOS binary (x86_64) | gwascat_2.45.0.tgz |
Dependencies
Depends: R (>= 4.1.0), methods
Imports: S4Vectors (>= 0.9.25), IRanges, Seqinfo, GenomeInfoDb, GenomicRanges (>= 1.29.6), GenomicFeatures, readr, Biostrings, AnnotationDbi, BiocFileCache, snpStats, VariantAnnotation, AnnotationHub, data.table, tibble
Suggests: DO.db, DT, knitr, RBGL, testthat, rmarkdown, dplyr, Gviz, Rsamtools, rtracklayer, graph, ggbio, DelayedArray, TxDb.Hsapiens.UCSC.hg19.knownGene, org.Hs.eg.db, BiocStyle
Enhances: SNPlocs.Hsapiens.dbSNP144.GRCh37
Reverse dependencies
Depends On Me (2): liftOver, vtpnet
Imports Me (1): circRNAprofiler
Suggests Me (5): GenomicScores, grasp2db, ldblock, parglms, TFutils