Bioc2026 Registration Open!

ggtreeSpace

Visualizing Phylomorphospaces using 'ggtree'

Bioconductor version: 3.24 · Package version: 1.9.0

This package is a comprehensive visualization tool specifically designed for exploring phylomorphospace. It not only simplifies the process of generating phylomorphospace, but also enhances it with the capability to add graphic layers to the plot with grammar of graphics to create fully annotated phylomorphospaces. It also provide some utilities to help interpret evolutionary patterns.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ggtreeSpace")

Details

MaintainerGuangchuang Yu <guangchuangyu@gmail.com>
AuthorGuangchuang Yu [aut, cre, ths, cph] (ORCID: <https://orcid.org/0000-0002-6485-8781>), Li Lin [ctb]
LicenseArtistic-2.0
URLhttps://github.com/YuLab-SMU/ggtreeSpace
Bug Reportshttps://github.com/YuLab-SMU/ggtreeSpace/issues
Downloads rank267
Source branchdevel
biocViewsAnnotation, Phylogenetics, Software, Visualization

Documentation

Download

Follow the installation instructions to use this package in your R session.

Source packageggtreeSpace_1.9.0.tar.gz
Windows binary (x86_64)ggtreeSpace_1.9.0.zip
macOS binary (arm64)ggtreeSpace_1.9.0.tgz
macOS binary (x86_64)ggtreeSpace_1.9.0.tgz
Dependencies

Depends: R (>= 4.1.0)

Imports: interp, ape, dplyr, GGally, ggplot2, grid, ggtree, phytools, rlang, tibble, tidyr, tidyselect, stats

Suggests: knitr, prettydoc, rmarkdown, BiocStyle, testthat (>= 3.0.0)