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ggtreeExtra

An R Package To Add Geometric Layers On Circular Or Other Layout Tree Of "ggtree"

Bioconductor version: 3.24 · Package version: 1.23.1

'ggtreeExtra' extends the method for mapping and visualizing associated data on phylogenetic tree using 'ggtree'. These associated data can be presented on the external panels to circular layout, fan layout, or other rectangular layout tree built by 'ggtree' with the grammar of 'ggplot2'.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ggtreeExtra")

Details

MaintainerShuangbin Xu <xshuangbin@163.com>
AuthorShuangbin Xu [aut, cre] (ORCID: <https://orcid.org/0000-0003-3513-5362>), Guangchuang Yu [aut, ctb] (ORCID: <https://orcid.org/0000-0002-6485-8781>)
LicenseGPL (>= 3)
URLhttps://github.com/YuLab-SMU/ggtreeExtra/
Bug Reportshttps://github.com/YuLab-SMU/ggtreeExtra/issues
Downloads rank2432
Source branchdevel
biocViewsAnnotation, Phylogenetics, Software, Visualization

Documentation

Download

Follow the installation instructions to use this package in your R session.

Source packageggtreeExtra_1.23.1.tar.gz
Windows binary (x86_64)ggtreeExtra_1.23.1.zip
macOS binary (arm64)ggtreeExtra_1.23.1.tgz
macOS binary (x86_64)ggtreeExtra_1.23.1.tgz
Dependencies

Imports: ggplot2 (>= 4.0.0), utils, rlang, ggnewscale, stats, ggtree, tidytree (>= 0.3.9), cli, magrittr, yulab.utils

Suggests: treeio, ggstar, patchwork, knitr, rmarkdown, prettydoc, markdown, testthat (>= 3.0.0), pillar

Reverse dependencies

Imports Me (2): DspikeIn, MicrobiotaProcess

Suggests Me (4): enrichplot, ggmsa, pctax, TransProR