geyser

Gene Expression displaYer of SummarizedExperiment in R

Bioconductor version: 3.24 · Package version: 1.5.0

Lightweight Expression displaYer (plotter / viewer) of SummarizedExperiment object in R. This package provides a quick and easy Shiny-based GUI to empower a user to use a SummarizedExperiment object to view and plot gene expression data.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("geyser")

Details

Maintainer	David McGaughey <mcgaughey@gmail.com>
Author	David McGaughey [aut, cre] (ORCID: <https://orcid.org/0000-0002-9224-2888>)
License	CC0
URL	https://github.com/davemcg/geyser
Bug Reports	https://github.com/davemcg/geyser/issues
System Requirements	pandoc (>= 2.8) - https://pandoc.org
Downloads rank	289
Source branch	devel
biocViews	GUI, GeneExpression, ShinyApps, Software

Documentation

Gene Expression displaY of SummarizedExperiment in R

Download

Follow the installation instructions to use this package in your R session.

Source package	geyser_1.5.0.tar.gz
Windows binary (x86_64)	geyser_1.5.0.zip
macOS binary (arm64)	geyser_1.5.0.tgz
macOS binary (x86_64)	geyser_1.5.0.tgz

Dependencies

Depends: R (>= 3.5.0)

Imports: bslib (>= 0.6.0), BiocStyle, ComplexHeatmap, cowplot, dplyr, DT, ggbeeswarm, ggplot2, ggrepel, ggh4x, htmltools, magrittr, pals, RColorBrewer, rlang, R.utils, shiny, shinyjs, S4Vectors, SummarizedExperiment, tibble, tidyselect, tidyr, yaml

Suggests: airway, knitr, DESeq2, rmarkdown, stringr, testthat (>= 3.0.0)