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gesel

Search for Interesting Gene Sets

Bioconductor version: 3.24 · Package version: 0.99.5

Query the gesel indices to identify interesting gene sets. Users can test for enrichment in their own list of genes and/or search by text in the set names or descriptions. The indices can be hosted remotely or on a local filesystem.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("gesel")

Details

MaintainerAaron Lun <infinite.monkeys.with.keyboards@gmail.com>
AuthorAaron Lun [aut, cre] (ORCID: <https://orcid.org/0000-0002-3564-4813>)
LicenseMIT + file LICENSE
URLhttps://github.com/gesel-inc/gesel-R
Bug Reportshttps://github.com/gesel-inc/gesel-R/issues
Downloads rank47
Source branchdevel
biocViewsDataImport, GeneSetEnrichment, Pathways, Software

Documentation

Download

Follow the installation instructions to use this package in your R session.

Source packagegesel_0.99.5.tar.gz
Windows binary (x86_64)gesel_0.99.5.zip
macOS binary (arm64)gesel_0.99.5.tgz
macOS binary (x86_64)gesel_0.99.5.tgz
Dependencies

Imports: utils, methods, rappdirs, httr2, Rcpp

LinkingTo: assorthead, Rcpp

Suggests: BiocStyle, knitr, testthat, rmarkdown, S4Vectors, IRanges