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geneRecommender

A gene recommender algorithm to identify genes coexpressed with a query set of genes

Bioconductor version: 3.24 · Package version: 1.85.0

This package contains a targeted clustering algorithm for the analysis of microarray data. The algorithm can aid in the discovery of new genes with similar functions to a given list of genes already known to have closely related functions.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("geneRecommender")

Details

MaintainerGreg Hather <ghather@gmail.com>
AuthorGregory J. Hather <ghather@gmail.com>, with contributions from Art B. Owen <art@stat.stanford.edu> and Terence P. Speed <terry@stat.berkeley.edu>
LicenseGPL (>= 2)
Downloads rank480
Source branchdevel
biocViewsClustering, Microarray, Software

Documentation

Download

Follow the installation instructions to use this package in your R session.

Source packagegeneRecommender_1.85.0.tar.gz
Windows binary (x86_64)geneRecommender_1.85.0.zip
macOS binary (arm64)geneRecommender_1.85.0.tgz
macOS binary (x86_64)geneRecommender_1.85.0.tgz
Dependencies

Depends: R (>= 1.8.0), Biobase (>= 1.4.22), methods

Imports: Biobase, methods, stats