frenchFISH
Poisson Models for Quantifying DNA Copy-number from FISH Images of Tissue Sections
Bioconductor version: 3.24 · Package version: 1.25.0
FrenchFISH comprises a nuclear volume correction method coupled with two types of Poisson models: either a Poisson model for improved manual spot counting without the need for control probes; or a homogenous Poisson Point Process model for automated spot counting.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("frenchFISH")Details
| Maintainer | Adam Berman <agb61@cam.ac.uk> |
| Author | Adam Berman, Geoff Macintyre |
| License | Artistic-2.0 |
| Downloads rank | 249 |
| Source branch | devel |
| biocViews | BiomedicalInformatics, CellBiology, Genetics, HiddenMarkovModel, Preprocessing, Software |
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | frenchFISH_1.25.0.tar.gz |
| Windows binary (x86_64) | frenchFISH_1.25.0.zip |
| macOS binary (arm64) | frenchFISH_1.25.0.tgz |
| macOS binary (x86_64) | frenchFISH_1.25.0.tgz |