fobitools

Tools for Manipulating the FOBI Ontology

Bioconductor version: 3.24 · Package version: 1.21.0

A set of tools for interacting with the Food-Biomarker Ontology (FOBI). A collection of basic manipulation tools for biological significance analysis, graphs, and text mining strategies for annotating nutritional data.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("fobitools")

Details

Maintainer	Pol Castellano-Escuder <polcaes@gmail.com>
Author	Pol Castellano-Escuder [aut, cre] (ORCID: <https://orcid.org/0000-0001-6466-877X>), Alex Sánchez-Pla [aut] (ORCID: <https://orcid.org/0000-0002-8673-7737>)
License	GPL-3
URL	https://github.com/pcastellanoescuder/fobitools/
Bug Reports	https://github.com/pcastellanoescuder/fobitools/issues
Downloads rank	427
Source branch	devel
biocViews	Annotation, BiomedicalInformatics, Cheminformatics, GeneSetEnrichment, GraphAndNetwork, MassSpectrometry, Metabolomics, Pathways, Software, Visualization

Download

Follow the installation instructions to use this package in your R session.

Source package	fobitools_1.21.0.tar.gz
Windows binary (x86_64)	fobitools_1.21.0.zip
macOS binary (arm64)	fobitools_1.21.0.tgz
macOS binary (x86_64)	fobitools_1.21.0.tgz

Dependencies

Depends: R (>= 4.1)

Imports: clisymbols, crayon, dplyr, fgsea, ggplot2, ggraph, magrittr, ontologyIndex, purrr, RecordLinkage, stringr, textclean, tictoc, tidygraph, tidyr, vroom

Suggests: BiocStyle, covr, ggrepel, kableExtra, knitr, metabolomicsWorkbenchR, POMA, rmarkdown, rvest, SummarizedExperiment, testthat (>= 2.3.2), tidyverse