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flowPloidy

Analyze flow cytometer data to determine sample ploidy

Bioconductor version: 3.24 · Package version: 1.39.0

Determine sample ploidy via flow cytometry histogram analysis. Reads Flow Cytometry Standard (FCS) files via the flowCore bioconductor package, and provides functions for determining the DNA ploidy of samples based on internal standards.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("flowPloidy")

Details

MaintainerTyler Smith <tyler@plantarum.ca>
AuthorTyler Smith <tyler@plantarum.ca>
LicenseGPL-3
URLhttps://github.com/plantarum/flowPloidy
Bug Reportshttps://github.com/plantarum/flowPloidy/issues
Downloads rank419
Source branchdevel
biocViewsFlowCytometry, GUI, Regression, Software, Visualization

Documentation

Download

Follow the installation instructions to use this package in your R session.

Source packageflowPloidy_1.39.0.tar.gz
Windows binary (x86_64)flowPloidy_1.39.0.zip
macOS binary (arm64)flowPloidy_1.39.0.tgz
macOS binary (x86_64)flowPloidy_1.39.0.tgz
Dependencies

Imports: flowCore, car, caTools, knitr, rmarkdown, minpack.lm, shiny, methods, graphics, stats, utils

Suggests: flowPloidyData, testthat