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exploreSE

Explorer for Your Bulk RNA Seq Analyses

Bioconductor version: 3.24 · Package version: 0.99.6

Interactive exploration of a Summarized experiment and associated DE analyses. A shiny app to inspect and interact with pre-calculated differential expression and functional enrichment results, and to facilitate comparisons between multiple models. This is meant to be a tool for exploration and discussion, rather than analysis.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("exploreSE")

Details

MaintainerJasper Spitzer <jasspitzer135@gmail.com>
AuthorJasper Spitzer [aut, cre] (ORCID: <https://orcid.org/0000-0001-9696-2092>)
LicenseMIT + file LICENSE
URLhttps://github.com/jaspitzer/exploreSE
Bug Reportshttps://github.com/jaspitzer/exploreSE/issues
Downloads rank4
Source branchdevel
biocViewsGO, GeneExpression, Pathways, RNASeq, ShinyApps, Software, Visualization

Documentation

Download

Follow the installation instructions to use this package in your R session.

Source packageexploreSE_0.99.6.tar.gz
macOS binary (arm64)exploreSE_0.99.5.tgz
macOS binary (x86_64)exploreSE_0.99.6.tgz
Dependencies

Depends: R (>= 4.5.0)

Imports: BiocGenerics, clusterProfiler, colourpicker, DeeDeeExperiment, DESeq2, dplyr, DT, forcats, ggplot2, htmltools, magrittr, matrixStats, methods, msigdbr, org.Hs.eg.db, org.Mm.eg.db, plotly, purrr, readr, rlang, S4Vectors, shiny, shinyWidgets, stats, stringr, SummarizedExperiment, tibble, tidyr, tidyselect

Suggests: airway, BiocStyle, knitr, rmarkdown, testthat (>= 3.0.0)