epivizrChart
R interface to epiviz web components
Bioconductor version: 3.24 · Package version: 1.35.0
This package provides an API for interactive visualization of genomic data using epiviz web components. Objects in R/BioConductor can be used to generate interactive R markdown/notebook documents or can be visualized in the R Studio's default viewer.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("epivizrChart")Details
| Maintainer | Hector Corrada Bravo <hcorrada@gmail.com> |
| Author | Brian Gottfried [aut], Jayaram Kancherla [aut], Hector Corrada Bravo [aut, cre] |
| License | Artistic-2.0 |
| Downloads rank | 555 |
| Source branch | devel |
| biocViews | GUI, Software, Visualization |
Documentation
- Visualizing Epiviz Web Components with epivizrChart
- Visualizing RangeSummarizedExperiment objects Shiny Apps using epivizrChart
- Visualizing Files with epivizrChart
- Visualizing genomic data in Shiny Apps using epivizrChart
Download
Follow the installation instructions to use this package in your R session.
| Source package | epivizrChart_1.35.0.tar.gz |
| macOS binary (arm64) | epivizrChart_1.35.0.tgz |
| macOS binary (x86_64) | epivizrChart_1.35.0.tgz |
Dependencies
Depends: R (>= 3.5.0)
Imports: epivizrData (>= 1.5.1), epivizrServer, htmltools, rjson, methods, BiocGenerics
Suggests: testthat, roxygen2, knitr, Biobase, GenomicRanges, S4Vectors, IRanges, SummarizedExperiment, antiProfilesData, hgu133plus2.db, Mus.musculus, BiocStyle, Homo.sapiens, shiny, minfi, Rsamtools, rtracklayer, RColorBrewer, magrittr, AnnotationHub