epigenomix
Epigenetic and gene transcription data normalization and integration with mixture models
Bioconductor version: 3.24 · Package version: 1.53.0
A package for the integrative analysis of RNA-seq or microarray based gene transcription and histone modification data obtained by ChIP-seq. The package provides methods for data preprocessing and matching as well as methods for fitting bayesian mixture models in order to detect genes with differences in both data types.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("epigenomix") Details
| Maintainer | Hans-Ulrich Klein <h.klein@uni-muenster.de> |
| Author | Hans-Ulrich Klein, Martin Schaefer |
| License | LGPL-3 |
| Downloads rank | 590 |
| Source branch | devel |
| biocViews | ChIPSeq, Classification, DifferentialExpression, GeneExpression, Software |
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | epigenomix_1.53.0.tar.gz |
| Windows binary (x86_64) | epigenomix_1.53.0.zip |
| macOS binary (arm64) | epigenomix_1.53.0.tgz |
| macOS binary (x86_64) | epigenomix_1.53.0.tgz |
Dependencies
Depends: R (>= 3.5.0), methods, Biobase, S4Vectors, IRanges, GenomicRanges, SummarizedExperiment
Imports: BiocGenerics, MCMCpack, Rsamtools, parallel, GenomeInfoDb, beadarray