epiNEM
epiNEM
Bioconductor version: 3.24 · Package version: 1.37.0
epiNEM is an extension of the original Nested Effects Models (NEM). EpiNEM is able to take into account double knockouts and infer more complex network signalling pathways. It is tailored towards large scale double knock-out screens.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("epiNEM")Details
| Maintainer | Martin Pirkl <martinpirkl@yahoo.de> |
| Author | Madeline Diekmann & Martin Pirkl |
| License | GPL-3 |
| URL | https://github.com/cbg-ethz/epiNEM/ |
| Bug Reports | https://github.com/cbg-ethz/epiNEM/issues |
| Downloads rank | 524 |
| Source branch | devel |
| biocViews | Network, NetworkInference, Pathways, Software, SystemsBiology |
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | epiNEM_1.37.0.tar.gz |
| macOS binary (arm64) | epiNEM_1.37.0.tgz |
| macOS binary (x86_64) | epiNEM_1.37.0.tgz |
Dependencies
Depends: R (>= 4.1)
Imports: BoutrosLab.plotting.general, BoolNet, e1071, gtools, stats, igraph, utils, lattice, latticeExtra, RColorBrewer, pcalg, minet, grDevices, graph, mnem, latex2exp
Suggests: knitr, RUnit, BiocGenerics, STRINGdb, devtools, rmarkdown, GOSemSim, AnnotationHub, org.Sc.sgd.db, BiocStyle