enrichplot
Visualization of Functional Enrichment Result
Bioconductor version: 3.24 · Package version: 1.99.7
The 'enrichplot' package provides visualization methods for interpreting functional enrichment results from ORA or GSEA analyses. It is designed to work with the 'clusterProfiler' ecosystem and builds on 'ggplot2' for flexible and extensible graphics.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("enrichplot")Details
| Maintainer | Guangchuang Yu <guangchuangyu@gmail.com> |
| Author | Guangchuang Yu [aut, cre] (ORCID: <https://orcid.org/0000-0002-6485-8781>) |
| License | Artistic-2.0 |
| URL | https://yulab-smu.top/contribution-knowledge-mining/ |
| Bug Reports | https://github.com/GuangchuangYu/enrichplot/issues |
| Downloads rank | 28774 |
| Source branch | devel |
| biocViews | Annotation, GO, GeneSetEnrichment, KEGG, Pathways, Software, Visualization |
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | enrichplot_1.99.7.tar.gz |
| macOS binary (arm64) | enrichplot_1.99.7.tgz |
| macOS binary (x86_64) | enrichplot_1.99.7.tgz |
Dependencies
Depends: R (>= 4.2.0)
Imports: aplot (>= 0.2.1), DOSE, dplyr, enrichit (>= 0.1.6), ggfun (>= 0.1.7), ggnewscale, ggplot2 (>= 3.5.0), ggrepel (>= 0.9.0), ggtangle (>= 0.0.9), ggtree, GOSemSim (>= 2.37.2), graphics, grid, igraph, methods, purrr, RColorBrewer, reshape2, rlang, scatterpie, stats, tidydr, utils, yulab.utils (>= 0.2.2)
Suggests: AnnotationDbi, clusterProfiler, cowplot, enrichR, europepmc, fgsea, ggarchery, ggforce, ggplotify, ggridges, ggstar, ggtreeExtra, ggupset, glue, gprofiler2, grDevices, gridExtra, gson, Matrix, org.Hs.eg.db, knitr, rmarkdown, scales, testthat (>= 3.0.0), tibble, tidyr, WebGestaltR
Reverse dependencies
Depends On Me (1): maEndToEnd
Imports Me (16): carnation, CBNplot, ChIPseeker, clusterProfiler, damidBind, enrichViewNet, epiSeeker, ExpHunterSuite, famat, GExPipe, goatea, GSEAlens, MicrobiomeProfiler, ReactomePA, TiDEomics, TraianProt
Suggests Me (15): debrowser, easyEWAS, GeoTcgaData, ggpicrust2, IOBR, ivolcano, mastR, methylGSA, ReporterScore, scFeatures, scGraphVerse, SCpubr, TDbasedUFEadv, tidybulk, VISTA