diffcoexp

Differential Co-expression Analysis

Bioconductor version: 3.24 · Package version: 1.33.0

A tool for the identification of differentially coexpressed links (DCLs) and differentially coexpressed genes (DCGs). DCLs are gene pairs with significantly different correlation coefficients under two conditions. DCGs are genes with significantly more DCLs than by chance.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("diffcoexp")

Details

Maintainer	Wenbin Wei <wenbin.wei2@durham.ac.uk>
Author	Wenbin Wei, Sandeep Amberkar, Winston Hide
License	GPL (>2)
URL	https://github.com/hidelab/diffcoexp
Downloads rank	418
Source branch	devel
biocViews	Coverage, DifferentialExpression, GeneExpression, ImmunoOncology, Microarray, OneChannel, RNASeq, Sequencing, Software, Transcription, TwoChannel

Documentation

About diffcoexp

Download

Follow the installation instructions to use this package in your R session.

Source package	diffcoexp_1.33.0.tar.gz
Windows binary (x86_64)	diffcoexp_1.33.0.zip
macOS binary (arm64)	diffcoexp_1.33.0.tgz
macOS binary (x86_64)	diffcoexp_1.33.0.tgz

Dependencies

Depends: R (>= 3.5), WGCNA, SummarizedExperiment

Imports: stats, DiffCorr, psych, igraph, BiocGenerics

Suggests: GEOquery, RUnit

Reverse dependencies

Imports Me (1): ExpHunterSuite