derfinderHelper

derfinder helper package

Bioconductor version: 3.24 · Package version: 1.47.0

Helper package for speeding up the derfinder package when using multiple cores. This package is particularly useful when using BiocParallel and it helps reduce the time spent loading the full derfinder package when running the F-statistics calculation in parallel.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("derfinderHelper")

Details

Maintainer	Leonardo Collado-Torres <lcolladotor@gmail.com>
Author	Leonardo Collado-Torres [aut, cre] (ORCID: <https://orcid.org/0000-0003-2140-308X>), Andrew E. Jaffe [aut] (ORCID: <https://orcid.org/0000-0001-6886-1454>), Jeffrey T. Leek [aut, ths] (ORCID: <https://orcid.org/0000-0002-2873-2671>)
License	Artistic-2.0
URL	https://github.com/leekgroup/derfinderHelper
Bug Reports	https://support.bioconductor.org/t/derfinderHelper
Downloads rank	915
Source branch	devel
biocViews	DifferentialExpression, ImmunoOncology, RNASeq, Sequencing, Software

Documentation

Introduction to derfinderHelper

Download

Follow the installation instructions to use this package in your R session.

Source package	derfinderHelper_1.47.0.tar.gz
Windows binary (x86_64)	derfinderHelper_1.47.0.zip
macOS binary (arm64)	derfinderHelper_1.47.0.tgz
macOS binary (x86_64)	derfinderHelper_1.47.0.tgz

Dependencies

Depends: R (>= 3.2.2)

Imports: IRanges (>= 1.99.27), Matrix, methods, S4Vectors (>= 0.2.2)

Suggests: sessioninfo, knitr (>= 1.6), BiocStyle (>= 2.5.19), RefManageR, rmarkdown (>= 0.3.3), testthat, covr

Reverse dependencies

Imports Me (1): derfinder