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calm

Covariate Assisted Large-scale Multiple testing

Bioconductor version: 3.24 · Package version: 1.27.0

Statistical methods for multiple testing with covariate information. Traditional multiple testing methods only consider a list of test statistics, such as p-values. Our methods incorporate the auxiliary information, such as the lengths of gene coding regions or the minor allele frequencies of SNPs, to improve power.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("calm")

Details

MaintainerKun Liang <kun.liang@uwaterloo.ca>
AuthorKun Liang [aut, cre]
LicenseGPL (>=2)
Bug Reportshttps://github.com/k22liang/calm/issues
Downloads rank289
Source branchdevel
biocViewsBayesian, DifferentialExpression, GeneExpression, Genetics, ImmunoOncology, Metabolomics, Microarray, MultipleComparison, Proteomics, RNASeq, Regression, Sequencing, Software, Transcriptomics

Documentation

Download

Follow the installation instructions to use this package in your R session.

Source packagecalm_1.27.0.tar.gz
Windows binary (x86_64)calm_1.27.0.zip
macOS binary (arm64)calm_1.27.0.tgz
macOS binary (x86_64)calm_1.27.0.tgz
Dependencies

Imports: mgcv, stats, graphics

Suggests: knitr, rmarkdown