bedbaser
A BEDbase client
Bioconductor version: 3.24 · Package version: 1.5.1
A client for BEDbase. bedbaser provides access to the API at api.bedbase.org. It also includes convenience functions to import BED files into GRanges objects and BEDsets into GRangesLists.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("bedbaser")Details
| Maintainer | Andres Wokaty <andres.wokaty@sph.cuny.edu> |
| Author | Andres Wokaty [aut, cre] (ORCID: <https://orcid.org/0009-0008-0900-8793>), Levi Waldron [aut] (ORCID: <https://orcid.org/0000-0003-2725-0694>), NCI [fnd] (GrantNo.: U24CA289073) |
| License | Artistic License 2.0 |
| URL | https://github.com/waldronlab/bedbaser |
| Bug Reports | https://github.com/waldronlab/bedbaser/issues |
| Downloads rank | 306 |
| Source branch | devel |
| biocViews | DataImport, Software, ThirdPartyClient |
Download
Follow the installation instructions to use this package in your R session.
| Source package | bedbaser_1.5.1.tar.gz |
| macOS binary (arm64) | bedbaser_1.5.0.tgz |
| macOS binary (x86_64) | bedbaser_1.5.1.tgz |
Dependencies
Depends: R (>= 4.5.0)
Imports: AnVIL (>= 1.16.0), BiocFileCache, curl, dplyr, GenomeInfoDb, GenomicRanges, httr, methods, purrr, rtracklayer, rlang, R.utils, stats, stringr, tibble, tidyr, tools, utils
Suggests: BiocStyle, knitr, liftOver, testthat (>= 3.0.0), withr